Cytobank Premium

Cytobank is a cloud-based platform that offers machine-learning assisted analysis of high dimensional single cell data. Premium licenses provide access to a shared cloud and are designed to meet the needs of principal investigators or smaller groups. Different license types are available depending on your needs. Powerful dimensionality reduction, clustering and prediction algorithms accelerate your research.  Use the Cytobank platform to manage and archive flow and mass cytometry or other single cell data and to easily collaborate with colleagues across disciplines and geographies from any web-based device.


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For Research Use Only. Not for use in diagnostic procedures.

Cytobank Premium Features

Reduce Subjectivity

  • Automatically cluster phenotypically similar cells using FlowSOM or SPADE
  • Use viSNE to visualize multidimensional data in a two-dimension plot, facilitating identification of rare biological subsets
  • Subset single cell data automatically and identify predictive biomarkers with statistical power among groups of samples using CITRUS

Data to Insight

Collaborate

Democratize ML-assisted Analysis

  • Made for biologists, no coding or plugins required, visit the Learning Center
  • Online knowledge repository full of articles, tips and tricks and support request form for new questions
  • Use the Experiment Manager to organize and find your projects, use the tree view to show relationships between experiments

Compatibility Loads any listmode file compliant with FCS standard up through version 3.1. DROP is able to import any numeric data in a text delimited (comma, semicolon, tab) format.
Plot Types Contour Plots, Density Plots, Dot Plots, Heatmap, Histograms, Overlay Plots
Gates CITRUS, FlowSOM, SPADE, viSNE, UMAP, opt-SNE, tSNE-CUDA
Statistics Channel Ranges, Coefficient of Variation (CV), Event Count, Event Count Ratio, Geometric Mean, Maximum, Mean, Median, Minimum, Percent in Gate (Literal), Percent of Population, Standard Deviation (SD), Variance
License Type Premium, Academic
Number of Users 5
License Term 1 Year

Content and Resources

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Resource Type
Cytobank Workflow - Unbiased Discovery or Guided Analysis Using Prior Knowledge? Flyer: Which algorithm to use for each research question? How to get the most out of your data.
Automating Flow Cytometry Brochure Mitigating sources of variability begins during assay design, continues during analytical method development, and through process monitoring
Cytobank Single Cell Big Picture Brochure Cytobank provides an established cloud-based platform that accelerates research productivity by enabling you to analyze and visualize multiple complex single-cell data sets efficiently and effectively.
Using Standardized Dry Antibody Panels for Flow Cytometry in the Assessment of Altered Immune Profiles in Response to SARS-CoV2 Infection In order to identify early indicators of disease severity in SARS-CoV2-infection, the proportions of well-established immune cell phenotypes have been subject to extensive research, utilizing flow cytometry as a core technology1-3. In order to ensure comparable and consistent results in the massively multi-institutional research setting of a global pandemic, the use of standardized antibody panels and procedures, as demonstrated by The ONE Study4-6, is a promising approach that also can lower technical barriers
An Automated FCS File Import and FlowSOM run in the Cytobank Platform Using the Application Programming Interface Learn step-by-step how to use an R script to automatically upload files to the Cytobank platform and perform an automated FlowSOM run, all via the API.

Technical Documents